Opendata

Our datasets

Characterization of the blood-brain barrier in genetically diverse laboratory mouse strains
https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/geo/query/acc.cgi?acc=GSE173793

Blood-brain barrier alterations in human brain tumors revealed by genome-wide transcriptomic profiling
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE159851


Public available datasets/databases from other groups:

Database of gene expression in adult mouse brain and lung vascular and perivascular cells
http://betsholtzlab.org/VascularSingleCells/database.html

Database of gene expression in brain endothelial cells from adult pericyte-deficient Pdgfbret/ret mice
https://betsholtzlab.org/Publications/RetECscRNAseq/database.html

Explore EM data from layer 2/3 of the mouse visual cortex
https://www.microns-explorer.org/phase1

NEURODATA
https://neurodata.io/project/ocp/

A Browsable Petascale Reconstruction of the Human Cortex
https://h01-release.storage.googleapis.com/landing.html

Ligand-Receptor connectome
http://forrest-lab.github.io/connectome/#/hive

Allen Brain map
https://portal.brain-map.org/


Useful tools and applications:

g:Profiler
https://biit.cs.ut.ee/gprofiler/gost